PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g69310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 207aa    MW: 23557.3 Da    PI: 8.5248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g69310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000216385123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++ F ++  L  H++ H
  CA00g69310 63 FSCNYCHRNFYSSQALGGHQNAH 85
                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-66090No hitNo description
PROSITE profilePS5015711.1986390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNMNSQNQSG QQQNDEHENN GLILDLTLLC NWDSKPSDDH TFHTISSSDD SQGNNDEKEH  60
QVFSCNYCHR NFYSSQALGG HQNAHKRERI TIAKRKQNMA SMPIMHGSFH RSLGIQAHST  120
IQKPVMSFNT FRAPAFPLLY NTHSAGWWSR RRMDQLPAIG RLIMPESHGT GRLNFGNMNK  180
FPVVIDSHLM TNHQEDSKKL DLSLKL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576997.11e-155PREDICTED: zinc finger protein 3-like
TrEMBLM1CRU41e-82M1CRU4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000733303e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1593066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-25C2H2 family protein